MD-Gem
The Maryland Genetics, Epidemiology, and Medicine Training Program

Genetic Epidemiology - Students

Michael Chou

Broadly, I am interested in population genetics and how genetic and genomic information is used. My current research involves analysing structural variation in Hirschsprung Disease, a neurodevelopmental birth defect.

Dylan Duchen

My research interests lie at the intersection of host-pathogen dynamics, genetic epidemiology, and the immune response to infectious diseases. I hope to apply genomic data at both the host and pathogen level to study human susceptibility or resistance to certain infectious diseases. I received my MPH in the epidemiology of microbial diseases from the Yale School of Public Health in 2014 and then worked as a bioinformatician focused on human genomics in oncology and chronic viral diseases before coming to JHSPH.

Woori Kim

Weiyan Li

I am interested in how genetics affects complex human diseases on its own and by gene-environment interaction. I am particularly interested in studying epigenetics as the intermediate layer between genes and environment. Also, I have an interest in early life exposures, especially how it may impact disease onset later in life through genetic, epigenetic or other mechanisms.

Entered Program: 2013

Stephanie Loomis

I’m interested in using genetic epi to explore the molecular mechanisms of disease, particularly disease such as diabetes, which have both strong genetic and environmental causes.

Yanzi Xiao

I am interested in the genetics of cervical cancer. I am currently working on a pre-doc fellowship with the Division of Cancer Epidemiology and Genetics at NCI. My dissertation is aimed to better understand the interaction between human papillomavirus (HPV) and host genetics.

Doctoral Students (Click on an individual for more information)
Michael Chou Photo

Michael Chou

Dylan Duchen Photo

Dylan Duchen

Woori Kim Photo

Woori Kim

Weiyan Li Photo

Weiyan Li

Stephanie Loomis Photo

Stephanie Loomis

Yanzi Xiao Photo

Yanzi Xiao

Masters Students
Moira Differding Photo

Moira Differding

Entered Program: 2017. Broadly, I’m interested in the role the microbiome plays in complex diseases. I am currently investigating the determinants of the infant gut microbiome and its potential as a modifiable risk factor for later-life obesity and cardiovascular outcomes.
Yuangen Liu Photo

Yuangen Liu

Entered Program: 2017. Research interests include COPD and asthma
Sahra Mohazzab-Hosseinian Photo

Sahra Mohazzab-Hosseinian

Entered Program: 2017. Research interests include epigenetics, pharmacogenomics, gene-environment interaction, and air pollution.
Valerie Morrill Photo

Valerie Morrill

Entered Program: 2017. My research interests are in the genetics of Autism and their interactions with environmental risk factors including inflammation.
Sowmya Venkataraghavan Photo

Sowmya Venkataraghavan

Entered Program: 2017. I am interested in using genetic epidemiology tools to discover variants associated with increased susceptibility to chronic diseases in different populations. I am currently working on the genetics of cleft lip and cleft palette for my master’s thesis
Wanying Zhang Photo

Wanying Zhang

Entered Program: 2017 My research interest is in genetic etiology and gene gene interactions of orofacial cleft.
Post-Doc Students (Click on an individual for more information)
Sampling of Former Students
Doctorate
Name Degree Year Research Project Current Position
Shan Andrews PhD 2018 Insights into early development from genetic and epigenetic data across tissue types Postdoc, UCSF Institute for Computational Health Sciences
Norazlin Kamal Nor PhD 2018 Copy Number Variants, Dysmorphology and Growth Abnormalities in Autism Spectrum Disorder Paediatrician and Lecturer, National University of Malaysia
Samantha Bomotti PhD 2018 Assessing the Nongenetic and Genetic Factors Affecting Refraction among the Aging Adult Population Clinical Genomics Scientist, Invitae
Brooke Sheppard PhD 2017 Examining Comorbidity, Prenatal Risk Factors, and the Genetic Determinants of Cognitive Developmental Trajectories for Insights into Autism Spectrum Disorder Postdoc, UCSF Department of Psychiatry
Martha Brucato PhD 2017 MD-PhD Johns Hopkins University
Poojitha Balakrishnan PhD 2015 Determinants of Blood Pressure Trajectories: the Atherosclerosis Risk In Communities (ARIC) Study Postdoctoral Fellow, Dr. Ana Navas-Acien, Johns Hopkins School of Public Health
Man Li PhD 2015 Understanding the genetic architecture of kidney function through analysis of genome-wide arrays Postdoc Fellow at Johns Hopkins Bloomberg School of Public Health (PI: Josef Coresh); Postdoc Fellow at University of Utah Departments of Nephrology and Human Genetics (PI: Alfred Cheung, Mark Yan)
Margaret Parker PhD 2015 Exome array analysis of pulmonary function in smokers with and without chronic obstructive pulmonary disease Postdoctoral Research Fellow, Channing Division of Network Medicine at Brigham and Women's Hospital Research Fellow, Harvard Medical School
Corinne Keet PhD 2014 Assistant Professor, JHMI
Genevieve Wojcik PhD 2013 Genomics of OPV response in Bangladeshi Children Post-Doc Stanford University, PI: Carlos Bustamante
Matthew Gribble PhD 2013 Arsenic Exposure, Arsenic Metabolism and Diabetes in the Strong Heart Post-Doc USC PI: Duncan Thomas
Dana Behneman PhD 2012 “Fine-Mapping linkage and family-based association of familial idiopathic scoliosis and chromosome 1”. (co-advisor with A.F. Wilson) Teacher
Adrienne Tin PhD 2012 Research topic to be determined; possibly investigating genetic and environmental predictors of type 2 diabetes or metabolic syndrome Post-doctoral fellow Department of Epidemiology JHSPH PI: Linda Kao
Asieh Golozar PhD 2012 Candidate Inflammation-related Genes and Esophageal Squamous Cell Carcinoma Research Associate Department of Epidemiology JHSPH
Tao Wu PhD 2011 Candidate genes for oral clefts: Testing for gene-environment interaction in Chinese case-parent trios Associate Professor, Peking University Health Science Center, Beijing, China
Andrew Jaffe PhD 2010 Incorporating High-Throughput DNA Methylation Data in Epidemiological Studies Investigator Lieber Institute for Brain Development
Bhoom Suktitpat PhD 2010 GWAS of inflammatory Markers in the GeneStar Study Instructor Department of Biochemistry Faculty of Medicine Siriraj Hospital
Kelly Benke PhD 2009 lL1 genotypes and cognitive trajectories Post-Doc JHSPH PI: Brion Maher
Katherine Bowers PhD 2009 Oxidative Stress Pathway and Autism Assistant Professor Department of Pediatrics University of Cincinnati
Edwina Yeung PhD 2008 Family history of coronary heart disease and the risk of type 2 diabetes; The effects of weight loss and macronutrient intake independent of weight loss on serum adiponectin levels Tenure-track Investigator, NIH, National Institute of Child Health and Human Development, Epidemiology Branch
Audrey Chu PhD 2008 Characterization of Type 2 Diabetes Mellitus Susceptibility Genes and their Interactions with Environmental Risk Factors in the Population Post-doctoral fellow, Division of Preventive Medicine, Brigham and Women's Hospital and Harvard Medical School
Ching-Yu Cheng PhD 2008 Searching for human obesity genes by linkage and admixture mapping Assistant Professor, National Singapore University
Yu-Ching Cheng PhD 2008 Genetic Epidemiology of inflammatory responses to high fat diet and aspirin Assistant Professor, Division of Endocrinology, Diabetes and Nutrition, School of Medicine, The University of Maryland
Adam Naj PhD 2008 Genetic Determinants of Type 2 Diabetes Mellitus and Related Endophenotypes in the Old Order Amish Assistant Professor, University of Pennsylvania
Audrey Grant PhD 2007 Genetic factors influencing immunoglobulin E levels and burden of Schistosoma mansoni infection in an endemic population in Brazil. Human Genetics of Infectious Diseases, INSERM / Université Paris Descartes
Amy Mahoney Matteini PhD 2007 Homocysteine and Frailty Research Associate Division of Geriatric Medicince and Geronotology JHMI
Masters
Name Degree Year Research Project Current Position
Zoe Packman MHS 2016
Jennifer Wang ScM 2015 A genome-wide association study of survival in head and neck squamous cell carcinoma
Yanzi Xiao ScM 2015 Detecting Gene-Gene Interactions for Cleft Lip with/without Cleft Palate in Targeted Sequencing Data Data Analyst at the Division of Cancer Epidemiology and Genetics at NCI
Stephanie Williams ScM 2012 Associations of 16p 11.2 CNVs with Autism: Communication and Family understand of Risk Statistical Analyst, Genetics Department at UNC
Tian Xiao Zhang ScM 2011 Pathway analysis in a case-parent trio study of oral clefts PhD Student, Washington Univeristy
Tiffany Green MHS 2011 The Heritability of Immunoglobulin Response to Schistosoma mansoni Infection in a Rural Brazilian Community Program Analyst, National Cancer Institute, NIH
Patel Poorav MHS 2010 X-Linked Genetic Factors Associated with Oral Facial Cleft Phenotypes. (co-advisor with M.D. Fallin) Medical Student Oregon Health & Science University
Rehan Qayyum MHS 2010 Genetic Determinants of Subclinical Coronary Artery Disease as measured by Stress Thallium Scan
Tanda Murray MHS 2008 Using genome wide SNPs to characterize admixture in African Americans and an African Caribbean MD/PhD Student, Mayo Clinic
Evaristus Nwulia MHS 2008 Genome-wide analysis of alcohol dependence subphenotype of bipolar disorder. Assistant Professor Director Psychiatric Neuroscience Laboratory Howard University
Roxann Ashworth MHS 2007 Association between genes on chromosome 4p16 and non-syndromic cleft lip and/or cleft palate Director, Sanger Sequencing and Real-Time PCR Laboratory JHMI